Naše nejnovější publikace

2024

Vráblová M, Smutná K, Chamrádová K, Vrábl D, Koutník I, Rusín J, Bouchalová M, Ocelková A, Sezimová H, Navrátil M, Chalupa R, Tenklová B, Pavlíková J (2024) Co-composting of sewage sludge as an effective technology for the production of substrates with reduced content of pharmaceutical residues. Sci Total Environ 915: 169818
Böde K, Javornik U, Dlouhý O, Zsíros O, Biswas A, Domonkos I, Šket P, Karlický V, Ughy B, Lambrev PH, Špunda V, Plavec J, Garab G (2024) Role of isotropic lipid phase in the fusion of photosystem II membranes. Photosynth Res 161: 127-140
Magyar M, Akhtar P, Sipka G, Domonkos I, Han WH, Li XY, Han GY, Shen JR, Lambrev PH, Garab G (2024) Effects of lipids on the rate-limiting steps in the dark-to-light transition of Photosystem II core complex of Thermostichus vulcanus. Front Plant Sci 15: 1381040
Govindjee G, Amesz B, Garab G, Stirbet A (2024) Remembering Jan Amesz (1934-2001): a great gentleman, a major discoverer, and an internationally renowned biophysicist of both oxygenic and anoxygenic photosynthesis. Photosynth Res 160: 125-142
Garab G (2024) Revisiting the nonregulatory, constitutive nonphotochemical quenching of the absorbed light energy in oxygenic photosynthetic organisms. Photosynthetica 62: 204-208
Volná A, Červeň J, Nezval J, Pech R, Špunda V (2024) Bridging the Gap: From Photoperception to the Transcription Control of Genes Related to the Production of Phenolic Compounds. Int J Mol Sci 25: 7066
Pech R, Volná A, Špunda V, Nezval J (2024) Blue light as an important factor increasing plant tolerance to acute photooxidative stress. Env Exp Bot 226: 105923
Szabó M, Nagy G, Garab G (2024) Non-Invasive Biophysical Techniques to Monitor the Structural Plasticity of the Photosynthetic Machinery of Live Diatom Cells. In: Goessling JW, Serodio J, Lavaud J (eds.), Diatom Photosynthesis: From Primary Production to High‐Value Molecules, Scrivener Publishing LLC, pp. 245-266
Garab G (2024) Contribution to the discussion on the nonregulatory nonphotochemical quenching. Photosynthetica 62: 289-291

2023

Bartas M, Volná A, Červeň J, Pucker B (2023) Identification of annotation artifacts concerning the chalcone synthase (CHS). BMC Res Notes 16: 109
Devadasu E, Kanna SD, Neelam S, Yadav RM, Nama S, Akhtar P, Polgár TF, Ughy B, Garab G, Lambrev P, Subramanyam R (2023) Long- and short-term acclimation of the photosynthetic apparatus to salinity in Chlamydomonas reinhardtii. The role of Stt7 protein kinase. Front Plant Sci 14: 1051711
Farkas A, Pap B, Zsíros O, Patai R, Shetty P, Garab G, Bíró T, Ördög V, Maróti G (2023) Salinity stress provokes diverse physiological responses of eukaryotic unicellular microalgae. Algal Res 73: 103155
Garab G, Magyar M, Sipka G, Lambrev PH (2023) New foundations for the physical mechanism of variable chlorophyll a fluorescence. Quantum efficiency versus the light-adapted state of photosystem II. J Exp Bot 74: 5458-5471
Jajoo A, Subramanyam R, Garab G, Allakhverdiev SI (2023) Honoring two stalwarts of photosynthesis research: Eva-Mari Aro and Govindjee. Photosynth Res 157: 43-51
Ounoki R, Sóti A, Ünnep R, Sipka G, Sárvári É, Garab G, Solymosi K (2023) Etioplasts are more susceptible to salinity stress than chloroplasts and photosynthetically active etio-chloroplasts of wheat (Triticum aestivum L.). Physiol Plant 175: e14100
Magyar M, Sipka G, Han WH, Li XY, Han GY, Shen JR, Lambrev PH, Garab G (2023) Characterization of the Rate-Limiting Steps in the Dark-To-Light Transitions of Closed Photosystem II: Temperature Dependence and Invariance of Waiting Times during Multiple Light Reactions. Int J Mol Sci 24: 94
Pečinka P, Bohálová N, Volná A, Kundrátová K, Brázda V, Bartas M (2023) Analysis of G-Quadruplex-Forming Sequences in Drought Stress-Responsive Genes, and Synthesis Genes of Phenolic Compounds in Arabidopsis thaliana. Life 13: 199
Volná A, Bartas M, Nezval J, Pech R, Pečinka P, Špunda V, Červeň J (2023) Beyond the Primary Structure of Nucleic Acids: Potential Roles of Epigenetics and Noncanonical Structures in the Regulations of Plant Growth and Stress Responses. In: Couée I (ed.), Plant Abiotic Stress Signaling. Methods in Molecular Biology, vol. 2642. Humana, New York, NY, pp. 331-361
Vrábl D, Nezval J, Pech R, Volná A, Mašková P, Pleva J, Kuzniciusová N, Provazová M, Štroch M, Špunda V (2023) Light Drives and Temperature Modulates: Variation of Phenolic Compounds Profile in Relation to Photosynthesis in Spring Barley. Int J Mol Sci 24: 2427
Vráblová M, Smutná K, Koutník I, Marková D, Vrábl D, Górecki KM, Žebrák R (2023) A novel approach for measuring membrane permeability for organic compounds via surface plasmon resonance detection. Chemosphere 312: 137165
Šahinbegovic H, Vdovin A, Šnaurová R, Ďurech M, Nezval J, Sobotka J, Hájek R, Jelínek T, Šimíček M (2023) Length-Dependent Translation Efficiency of ER-Destined Proteins. Curr Issues Mol Biol 45: 6717-6727

2022

Bartas M, Volná A, Beaudoin CA, Poulsen ET, Červeň J, Brázda V, Špunda V, Blundell TL, Pečinka P (2022) Unheeded SARS-CoV-2 proteins? A deep look into negative-sense RNA. Brief Bioinform 23: May 2022, bbac045
Beaudoin CA, Bartas M, Volná A, Pečinka P, Blundell TL (2022) Are there hidden genes in DNA/RNA vaccines? Front Immunol 13: 801915
Dlouhý O, Karlický V, Javornik U, Kurasová I, Zsiros O, Šket P, Kanna SD, Böde K, Večeřová K, Urban O, Gasanoff ES, Plavec J, Špunda V, Ughy B, Garab G (2022) Structural Entities Associated with Different Lipid Phases of Plant Thylakoid Membranes-Selective Susceptibilities to Different Lipases and Proteases. Cells 11: 2681
Dobrovolná M, Bohálová N, Peška V, Wang J, Luo Y, Bartas M, Volná A, Mergny J-L, Brázda V (2022) The Newly Sequenced Genome of Pisum sativum Is Replete with Potential G-Quadruplex-Forming Sequences—Implications for Evolution and Biological Regulation. Int J Mol Sci 23: 8482
Garab G, Yaguzhinsky LS, Dlouhý O, Nesterov SV, Špunda V, Gasanoff ES (2022) Structural and functional roles of non-bilayer lipid phases of chloroplast thylakoid membranes and mitochondrial inner membranes. Prog Lipid Res 86: 101163
Govindjee G, de Kouchkovsky Y, Garab G (2022) Tribute to Jean Lavorel (1928-2021), an outstanding experimenter and a brilliant theorist of photosynthesis. Photosynthetica 60: 323-325
Magyar M, Akhtar P, Sipka G, Han W, Li X, Han G, Shen J, Lambrev P, Garab G (2022) Dependence of the rate-limiting steps in the dark-to-light transition of photosystem II on the lipidic environment of the reaction center. Photosynthetica 60: 147-156
Pech R, Volná A, Hunt L, Bartas M, Červeň J, Pečinka P, Špunda V, Nezval J (2022) Regulation of phenolic compound production by light varying in spectral quality and total irradiance. Int J Mol Sci 23: 6533
Pleckaitis M, Habach F, Kontenis L, Steinbach G, Jarockyte G, Kalnaityte A, Domonkos I, Akhtar P, Alizadeh M, Bagdonas S, Karabanovas V, Garab G, Rotomskis R, Barzda V (2022) Structure and principles of self-assembly of giant “sea urchin” type sulfonatophenyl porphine aggregates. Nano Res 15: 5527-5537
Sipka G, Nagy L, Magyar M, Akhtar P, Shen JR, Holzwarth AR, Lambrev PH, Garab G (2022) Light-induced reversible reorganizations in closed Type II reaction centre complexes: physiological roles and physical mechanisms. Open Biol 12: 220297
Šnaurová R, Vdovin A, Durech M, Nezval J, Žihala D, Jelínek T, Hájek R, Šimíček M (2022) Deubiquitinase OTUD1 Resolves Stalled Translation on polyA and Rare Codon Rich mRNAs. Mol Cell Biol 42: e0026522
Štroch M, Karlický V, Ilík P, Ilíková I, Opatíková M, Nosek L, Pospíšil P, Svrčková M, Rác M, Roudnický P, Zdráhal Z, Špunda V, Kouřil R (2022) Spruce versus Arabidopsis: different strategies of photosynthetic acclimation to light intensity change. Photosynth Res 154: 21-40
Volná A, Bartas M, Pečinka P, Špunda V, Červeň J (2022) What Do We Know about Barley miRNAs? Int J Mol Sci 23: 14755
Wang H, Qin H, Garab G, Gasanoff ES (2022) Short-Chained Alcohols Make Membrane Surfaces Conducive for Melittin Action: Implication for the Physiological Role of Alcohols in Cells. Cells 11: 1928

2021

Bartas M, Brázda V, Volná A, Červeň J, Pečinka P, Zawacka-Pankau JE (2021) The changes in the p53 protein across the animal kingdom point to its involvement in longevity. Int J Mol Sci 22: 8512
Bartas M, Goswami P, Lexa M, Červeň J, Volná A, Fojta M, Brázda V, Pečinka P (2021) Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains. Brief Bioinform 22: 1-2
Dlouhý O, Javornik U, Zsiros O, Šket P, Karlický V, Špunda V, Plavec J, Garab G (2021) Lipid Polymorphism of the Subchloroplast-Granum and Stroma Thylakoid Membrane-Particles. I. ³¹P-NMR Spectroscopy. Cells 10: 2354
Dlouhý O, Karlický V, Arshad R, Zsiros O, Domonkos I, Kurasová I, Wacha AF, Morosinotto T, Bóta A, Kouřil R, Špunda V, Garab G (2021) Lipid Polymorphism of the Subchloroplast-Granum and Stroma Thylakoid Membrane-Particles. II. Structure and Functions. Cells 10: 2363
Gasanoff E, Liu Y, Li F, Hanlon P, Garab G (2021) Bee Venom Melittin Disintegrates the Respiration of Mitochondria in Healthy Cells and Lymphoblasts, and Induces the Formation of Non-Bilayer Structures in Model Inner Mitochondrial Membranes. Int J Mol Sci 22: 11122
Gasanoff ES, Yaguzhinsky LS, Garab G (2021) Cardiolipin, Non-Bilayer Structures and Mitochondrial Bioenergetics: Relevance to Cardiovascular Disease. Cells 10: 1721
Goswami P, Bartas M, Lexa M, Bohálová N, Volná A, Červeň J, Červeňová V, Pečinka P, Špunda V, Fojta M, Brázda V (2021) SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci. Brief Bioinform 22: 1338-1345
Hunt L, Klem K, Lhotáková Z, Vosolsobě S, Oravec M, Urban O, Špunda V, Albrechtová J (2021) Light and CO₂ Modulate the Accumulation and Localization of Phenolic Compounds in Barley Leaves. Antioxidants 10: 385
Ilíková I, Ilík P, Opatíková M, Arshad R, Nosek L, Karlický V, Kučerová Z, Roudnický P, Pospíšil P, Lazár D, Bartoš J, Kouřil R (2021) Towards spruce-type photosystem II: consequences of the loss of light-harvesting proteins LHCB3 and LHCB6 in Arabidopsis. Plant Physiol 187: 2691-2715
Kanna SD, Domonkos I, Kóbori TO, Dergez Á, Böde K, Nagyapáti S, Zsiros O, Ünnep R, Nagy G, Garab G, Szilák L, Solymosi K, Kovács L, Ughy B (2021) Salt stress induces paramylon accumulation and fine-tuning of the macro-organization of thylakoid membranes in Euglena gracilis cells. Front Plant Sci 12: 725699
Karlický V, Kmecová Materová Z, Kurasová I, Nezval J, Štroch M, Garab G, Špunda V (2021) Accumulation of geranylgeranylated chlorophylls in the pigment-protein complexes of Arabidopsis thaliana acclimated to green light: effects on the organization of light-harvesting complex II and photosystem II functions. Photosynth Res 149: 233-252
Musiolková M, Huszár P, Navrátil M, Špunda V (2021) Impact of season, cloud cover, and air pollution on different spectral regions of ultraviolet and visible incident solar radiation at the surface. Q J R Meteorol Soc 147: 2834-2849
Nagy G, Garab G (2021) Neutron scattering in photosynthesis research: recent advances and perspectives for testing crop plants. Photosynth Res 150: 41-49
Radosavljevic JS, Mitrovic AL, Radotic K, Zimanyi L, Garab G, Steinbach G (2021) Differential Polarization Imaging of Plant Cells. Mapping the Anisotropy of Cell Walls and Chloroplasts. Int J Mol Sci 22: 7661
Sipka G, Magyar M, Mezzetti A, Akhtar P, Zhu Q, Xiao Y, Han G, Santabarbara S, Shen J, Lambrev PH, Garab G (2021) Light-adapted charge-separated state of photosystem II: structural and functional dynamics of the closed reaction center. Plant Cell 33: 1286-1302
Volná A, Bartas M, Karlický V, Nezval J, Kundrátová K, Pečinka P, Špunda V, Červeň J (2021) G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story. Int J Mol Sci 22: 7381
Volná A, Bartas M, Nezval J, Špunda V, Pečinka P, Červeň J (2021) Searching for G-quadruplex-binding proteins in plants: new insight into possible G-quadruplex regulation. BioTech 10: 20
Vráblová M, Marková D, Vrábl D, Koutník I, Sokolová B, Hronková M (2021) Surface plasmon resonance: An innovative method for studying water permeability of plant cuticles. Plant Sci 310: 110978

2020

Akhtar P, Nowakowski PJ, Wang WD, Do TN, Zhao SH, Siligardi G, Garab G, Shen JR, Tan HS, Lambrev PH (2020) Spectral tuning of light-harvesting complex II in the siphonous alga Bryopsis corticulans and its effect on energy transfer dynamics. Biochim Biophys Acta-Bioenerg 1861: 148191
Barták M, Orekhova A, Nezval J, Oravec M, Hájek J, Špunda V, Tříska J, Bednaříková M, Giudici GNM, Pech R (2020) Light regimen-induced variability of photosynthetic pigments and UV-B absorbing compounds in Luzula sylvatica from Arcto-Alpine tundra. Czech Polar Reports 10: 263-280
Bartas M, Brázda V, Bohálová N, Cantara A, Volná A, Stachurová T, Malachová K, Jagelská EB, Porubiaková O, Červeň J, Pečinka P (2020) In-Depth Bioinformatic Analyses of Nidovirales Including Human SARS-CoV-2, SARS-CoV, MERS-CoV Viruses Suggest Important Roles of Non-canonical Nucleic Acid Structures in Their Lifecycles. Front Microbiol 11: 1583
Dlouhý O, Kurasová I, Karlický V, Javornik U, Šket P, Petrova NZ, Krumova SB, Plavec J, Ughy B, Špunda V, Garab G (2020) Modulation of non-bilayer lipid phases and the structure and functions of thylakoid membranes: effects on the water-soluble enzyme violaxanthin de-epoxidase. Sci Rep 10: 11959
Hunt L, Klem K, Lhotáková Z, Vosolsobě S, Oravec M, Urban O, Špunda V, Albrechtová J (2020) Accumulation and localization of phenolic compounds under future environmental conditions: the joint effects of CO₂ concentration and light intensity. Authorea. November 16, 2020
Kováč D, Veselá B, Klem K, Večeřová K, Kmecová Materová Z, Penuelas J, Urban O (2020) Correction of PRI for carotenoid pigment pools improves photosynthesis estimation across different irradiance and temperature conditions. Remote Sens Environ 244: 111834
Kušnierová P, Zeman D, Revendová K, Dlouhý O (2020) Detection of monoclonal free light chains by immunofixation electrophoresis and isoelectric focusing – comparison with the quantitative method of determination. Scand J Clin Lab Invest 80: 556-561
Stirbet A, Bjorn LO, Shevela D, Allakhverdiev SI, Nonomura A, Zhu XG, Lazár D, Pareek A, Garab G, Eaton-Rye JJ (2020) Celebrating the contributions of Govindjee after his retirement: 1999-2020. N Z J Bot 58: 422-460
Ünnep R, Paul S, Zsiros O, Kovács L, Székely NK, Steinbach G, Appavou M-S, Porcar L, Holzwarth AR, Garab G, Nagy G (2020) Thylakoid membrane reorganizations revealed by small-angle neutron scattering of Monstera deliciosa leaves associated with non-photochemical quenching. Open Biol 10: 200144
Vráblová M, Vrábl D, Sokolová B, Marková D, Hronková M (2020) A modified method for enzymatic isolation of and subsequent wax extraction from Arabidopsis thaliana leaf cuticle. Plant Methods 16: 129
Wilhelm C, Goss R, Garab G (2020) The fluid-mosaic membrane theory in the context of photosynthetic membranes: Is the thylakoid membrane more like a mixed crystal or like a fluid? J Plant Physiol 252: 153246
Zsiros O, Nagy G, Patai R, Solymosi K, Gasser U, Polgár TF, Garab G, Kovács L, Hörcsik ZT (2020) Similarities and Differences in the Effects of Toxic Concentrations of Cadmium and Chromium on the Structure and Functions of Thylakoid Membranes in Chlorella variabilis. Front Plant Sci 11: 1006
Zsiros O, Ünnep R, Nagy G, Almásy L, Patai R, Székely NK, Kohlbrecher J, Garab G, Dér A, Kovács L (2020) Role of Protein-Water Interface in the Stacking Interactions of Granum Thylakoid Membranes-As Revealed by the Effects of Hofmeister Salts. Front Plant Sci 11: 1257

2019

Akhtar P, Gorfol F, Garab G, Lambrev PH (2019) Dependence of chlorophyll fluorescence quenching on the lipid-to-protein ratio in reconstituted light-harvesting complex II membranes containing lipid labels. Chem Phys 522: 242-248
Akhtar P, Lindorfer D, Lingvay M, Pawlak K, Zsiros O, Siligardi G, Jávorfi T, Dorogi M, Ughy B, Garab G, Renger T, Lambrev P (2019) Anisotropic Circular Dichroism of Light-Harvesting Complex II in Oriented Lipid Bilayers: Theory Meets Experiment. J Phys Chem B 123: 1090-1098
Brelsford CC, Morales LO, Nezval J, Kotilainen TK, Hartikainen SM, Aphalo PJ, Robson TM (2019) Do UV-A radiation and blue light during growth prime leaves to cope with acute high light in photoreceptor mutants of Arabidopsis thaliana? Physiol Plant 165: 537-554
Holub P, Nezval J, Štroch M, Špunda V, Urban O, Jansen MAK, Klem K (2019) Induction of phenolic compounds by UV and PAR is modulated by leaf ontogeny and barley genotype. Plant Physiol Biochem 134: 81-93
Opálková M, Burda M, Navrátil M, Špunda V (2019) Influence of air pollutants on incident photosynthetically active radiation during clear sky conditions in Ostrava, Czech Republic. Atmos Environ 215: 116910
Semer J, Navrátil M, Špunda V, Štroch M (2019) Chlorophyll fluorescence parameters to assess utilization of excitation energy in photosystem II independently of changes in leaf absorption. J Photochem Photobiol B: Biol 197: 111535
Sipka G, Müller P, Brettel K, Magyar M, Kovács L, Zhu Q, Xiao Y, Han G, Lambrev PH, Shen J-R, Garab G (2019) Redox transients of P680 associated with the incremental chlorophyll-a fluorescence yield rises elicited by a series of saturating flashes in diuron-treated photosystem II core complex of Thermosynechococcus vulcanus. Physiol Plant 166: 22-32
Ughy B, Karlický V, Dlouhý O, Javornik U, Materová Z, Zsiros O, Šket P, Plavec J, Špunda V, Garab G (2019) Lipid-polymorphism of plant thylakoid membranes. Enhanced non-bilayer lipid phases associated with increased membrane permeability. Physiol Plant 166: 278-287
Zsiros O, Nagy V, Párducz Á, Nagy G, Ünnep R, El Ramady H, Prokisch J, Lisztes-Szabó Z, Fári M, Csajbók J, Tóth SZ, Garab G, Domokos-Szabolcsy É (2019) Effects of selenate and red Se-nanoparticles on the photosynthetic apparatus of Nicotiana tabacum. Photosynth Res 139: 449-460

2018

Bartas M, Brázda V, Karlický V, Červeň J, Pečinka P (2018) Bioinformatics analyses and in vitro evidence for five and six stacked G-quadruplex forming sequences. Biochimie 150: 70-75
Dlouhý O, Kušnierová P, Kurasová I, Cisariková M, Zeman D (2018) Chemiluminescent detection of oligoclonal immunoglobulins after isoelectric focusing and affinity-mediated immunoblotting. Biomed Pap-Olomouc 162: 107-115
Domokos-Szabolcsy É, Fári M, Márton L, Czakó M, Veres S, Elhawat N, Antal G, El-Ramady H, Zsíros O, Garab G, Alshaal T (2018) Selenate tolerance and selenium hyperaccumulation in the monocot giant reed (Arundo donax), a biomass crop plant with phytoremediation potential. Environ Sci Pollut Res 25: 31368-31380
Kotakis C, Akhtar P, Zsiros O, Garab G, Lambrev PH (2018) Increased thermal stability of photosystem II and the macro-organization of thylakoid membranes, induced by co-solutes, associated with changes in the lipid-phase behaviour of thylakoid membranes. Photosynthetica 56: 254-264
Magyar M, Sipka G, Kovács L, Ughy B, Zhu QJ, Han GY, Špunda V, Lambrev PH, Shen JR, Garab G (2018) Rate-limiting steps in the dark-to light transition of Photosystem II – revealed by chlorophyll-a fluorescence induction. Sci Rep 8: 2755
Opálková M, Navrátil M, Špunda V, Blanc P, Wald, L (2018) A Database of 10 min Average Measurements of Solar Radiation and Meteorological Variables in Ostrava, Czech Republic. Earth Syst Sci Data 10: 837-846
Patty CHL, Luo DA, Snik F, Ariese F, Buma WJ, ten Kate IL, van Spanning RJM, Sparks WB, Germer TA, Garab G, Kudenov MW (2018) Imaging linear and circular polarization features in leaves with complete Mueller matrix polarimetry. Biochim Biophys Acta-Gen Subj 1862: 1350-1363
Semer J, Štroch M, Špunda V, Navrátil M (2018) Partitioning of absorbed light energy within photosystem II in barley can be affected by chloroplast movement. J Photochem Photobiol B: Biol 186: 98-106
Vráblová M, Hronková M, Vrábl D, Kubásek J, Šantrůček J (2018) Light intensity-regulated stomatal development in three generations of Lepidium sativum. Env Exp Bot 156: 316-324